HL_8YOO_042

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8YOO|1|L5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_042 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1777

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8YOO|1|L5|G|2624
8YOO|1|L5|U|2625
8YOO|1|L5|U|2626
8YOO|1|L5|C|2627
8YOO|1|L5|U|2628
8YOO|1|L5|C|2629
8YOO|1|L5|U|2630
8YOO|1|L5|U|2631
8YOO|1|L5|U|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22