HL_8YOO_057

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UGAGAGACUCUGA

Length

13 nucleotides

Bulged bases

8YOO|1|L5|G|3955

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|U|3950
8YOO|1|L5|G|3951
8YOO|1|L5|A|3952
8YOO|1|L5|G|3953
8YOO|1|L5|A|3954
8YOO|1|L5|G|3955
8YOO|1|L5|A|4056
8YOO|1|L5|C|4057
8YOO|1|L5|U|4058
8YOO|1|L5|C|4059
8YOO|1|L5|U|4060
8YOO|1|L5|G|4061
8YOO|1|L5|A|4062

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36