HL_8YOO_058

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_058 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3471

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8YOO|1|L5|A|4098
8YOO|1|L5|G|4099
8YOO|1|L5|C|4100
8YOO|1|L5|C|4101
8YOO|1|L5|C|4102
8YOO|1|L5|C|4103
8YOO|1|L5|G|4104
8YOO|1|L5|A|4105
8YOO|1|L5|G|4106
8YOO|1|L5|G|4107
8YOO|1|L5|G|4108
8YOO|1|L5|G|4109
8YOO|1|L5|C|4110
8YOO|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34