HL_8YOO_062

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_062 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1675

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8YOO|1|L5|G|4250
8YOO|1|L5|A|4251
8YOO|1|L5|C|4252
8YOO|1|L5|A|4253
8YOO|1|L5|G|4254
8YOO|1|L5|A|4255
8YOO|1|L5|A|4256
8YOO|1|L5|A|4257
8YOO|1|L5|C|4258

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11