HL_8YOO_073

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8YOO|1|L5|G|4694, 8YOO|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0674

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8YOO|1|L5|C|4688
8YOO|1|L5|U|4689
8YOO|1|L5|G|4690
8YOO|1|L5|A|4691
8YOO|1|L5|A|4692
8YOO|1|L5|C|4693
8YOO|1|L5|G|4694
8YOO|1|L5|C|4695
8YOO|1|L5|C|4696
8YOO|1|L5|U|4697
8YOO|1|L5|C|4698
8YOO|1|L5|U|4699
8YOO|1|L5|A|4700
8YOO|1|L5|A|4701
8YOO|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40