HL_8YOO_120

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

8YOO|1|L5|C|1763, 8YOO|1|L5|A|1765, 8YOO|1|L5|A|1766, 8YOO|1|L5|A|1767, 8YOO|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|G|1759
8YOO|1|L5|G|1760
8YOO|1|L5|G|1761
8YOO|1|L5|C|1762
8YOO|1|L5|C|1763
8YOO|1|L5|G|1764
8YOO|1|L5|A|1765
8YOO|1|L5|A|1766
8YOO|1|L5|A|1767
8YOO|1|L5|C|1768
8YOO|1|L5|G|1769
8YOO|1|L5|A|1770
8YOO|1|L5|U|1771
8YOO|1|L5|C|1772
8YOO|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18