HL_8YOP_019

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8YOP|1|L5|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_019 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3219

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8YOP|1|L5|C|1405
8YOP|1|L5|G|1406
8YOP|1|L5|C|1407
8YOP|1|L5|G|1408
8YOP|1|L5|C|1409
8YOP|1|L5|U|1410
8YOP|1|L5|C|1411
8YOP|1|L5|G|1412

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29