HL_8YOP_026

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

8YOP|1|L5|A|1767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|G|1759
8YOP|1|L5|G|1760
8YOP|1|L5|G|1761
8YOP|1|L5|C|1762
8YOP|1|L5|C|1763
8YOP|1|L5|G|1764
8YOP|1|L5|A|1765
8YOP|1|L5|A|1766
8YOP|1|L5|A|1767
8YOP|1|L5|C|1768
8YOP|1|L5|G|1769
8YOP|1|L5|A|1770
8YOP|1|L5|U|1771
8YOP|1|L5|C|1772
8YOP|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18