HL_8YOP_032

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGCCCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|C|2110
8YOP|1|L5|G|2111
8YOP|1|L5|G|2112
8YOP|1|L5|C|2113
8YOP|1|L5|C|2249
8YOP|1|L5|C|2250
8YOP|1|L5|G|2251
8YOP|1|L5|G|2252

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6