HL_8YOP_057

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGGGAGGCCCGGGCCGCCGGUGAAAUACCACU

Length

33 nucleotides

Bulged bases

8YOP|1|L5|G|4035, 8YOP|1|L5|C|4038, 8YOP|1|L5|U|4044

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|G|3967
8YOP|1|L5|U|3968
8YOP|1|L5|G|3969
8YOP|1|L5|G|3970
8YOP|1|L5|G|3971
8YOP|1|L5|A|3972
8YOP|1|L5|G|3973
8YOP|1|L5|G|3974
8YOP|1|L5|C|3975
8YOP|1|L5|C|3976
8YOP|1|L5|C|3977
8YOP|1|L5|G|4034
8YOP|1|L5|G|4035
8YOP|1|L5|G|4036
8YOP|1|L5|C|4037
8YOP|1|L5|C|4038
8YOP|1|L5|G|4039
8YOP|1|L5|C|4040
8YOP|1|L5|C|4041
8YOP|1|L5|G|4042
8YOP|1|L5|G|4043
8YOP|1|L5|U|4044
8YOP|1|L5|G|4045
8YOP|1|L5|A|4046
8YOP|1|L5|A|4047
8YOP|1|L5|A|4048
8YOP|1|L5|U|4049
8YOP|1|L5|A|4050
8YOP|1|L5|C|4051
8YOP|1|L5|C|4052
8YOP|1|L5|A|4053
8YOP|1|L5|C|4054
8YOP|1|L5|U|4055

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lz

60S ribosomal protein L10a