HL_8YOP_060

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8YOP|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_060 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0743

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8YOP|1|L5|C|4193
8YOP|1|L5|U|4194
8YOP|1|L5|G|4195
8YOP|1|L5|G|4196
8YOP|1|L5|G|4197
8YOP|1|L5|G|4198
8YOP|1|L5|C|4199
8YOP|1|L5|G|4200
8YOP|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain Lb

60S ribosomal protein L29