HL_8YOP_073

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8YOP|1|L5|G|4694, 8YOP|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0602

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8YOP|1|L5|C|4688
8YOP|1|L5|U|4689
8YOP|1|L5|G|4690
8YOP|1|L5|A|4691
8YOP|1|L5|A|4692
8YOP|1|L5|C|4693
8YOP|1|L5|G|4694
8YOP|1|L5|C|4695
8YOP|1|L5|C|4696
8YOP|1|L5|U|4697
8YOP|1|L5|C|4698
8YOP|1|L5|U|4699
8YOP|1|L5|A|4700
8YOP|1|L5|A|4701
8YOP|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40