HL_8YOP_100

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

8YOP|1|S2|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_100 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3147

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8YOP|1|S2|C|833
8YOP|1|S2|C|834
8YOP|1|S2|C|835
8YOP|1|S2|G|836
8YOP|1|S2|A|837
8YOP|1|S2|G|838
8YOP|1|S2|C|839
8YOP|1|S2|C|840
8YOP|1|S2|G|841

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24