HL_8YOP_112

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8YOP|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_112 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3183

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8YOP|1|S2|C|1416
8YOP|1|S2|C|1417
8YOP|1|S2|C|1418
8YOP|1|S2|C|1419
8YOP|1|S2|G|1420
8YOP|1|S2|A|1421
8YOP|1|S2|G|1422
8YOP|1|S2|C|1423
8YOP|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19