HL_8YOP_117

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCGGGGUGCCCUGGCGGCCCUG*G

Length

23 nucleotides

Bulged bases

8YOP|1|S2|G|1760, 8YOP|1|S2|C|1769, 8YOP|1|S2|G|1770, 8YOP|1|S2|C|1774

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|S2|C|1755
8YOP|1|S2|C|1756
8YOP|1|S2|G|1757
8YOP|1|S2|G|1758
8YOP|1|S2|G|1759
8YOP|1|S2|G|1760
8YOP|1|S2|U|1761
8YOP|1|S2|G|1771
8YOP|1|S2|C|1772
8YOP|1|S2|C|1773
8YOP|1|S2|C|1774
8YOP|1|S2|U|1775
8YOP|1|S2|G|1776
8YOP|1|S2|G|1777
8YOP|1|S2|C|1769
8YOP|1|S2|G|1770
8YOP|1|S2|G|1771
8YOP|1|S2|C|1772
8YOP|1|S2|C|1773
8YOP|1|S2|C|1774
8YOP|1|S2|U|1775
8YOP|1|S2|G|1776
*
8YOP|1|S2|G|1777

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6