HL_8YOP_121
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAGAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGA
- Length
- 113 nucleotides
- Bulged bases
- 8YOP|1|L5|A|3952, 8YOP|1|L5|U|3957, 8YOP|1|L5|A|3962, 8YOP|1|L5|G|3969, 8YOP|1|L5|C|3978, 8YOP|1|L5|C|3979, 8YOP|1|L5|G|3980, 8YOP|1|L5|G|3981, 8YOP|1|L5|C|3982, 8YOP|1|L5|G|3983, 8YOP|1|L5|C|3984, 8YOP|1|L5|C|3985, 8YOP|1|L5|C|3986, 8YOP|1|L5|C|3987, 8YOP|1|L5|C|3988, 8YOP|1|L5|C|3989, 8YOP|1|L5|C|3990, 8YOP|1|L5|G|3991, 8YOP|1|L5|G|3992, 8YOP|1|L5|U|3993, 8YOP|1|L5|G|3994, 8YOP|1|L5|U|3995, 8YOP|1|L5|C|3996, 8YOP|1|L5|C|3997, 8YOP|1|L5|C|3998, 8YOP|1|L5|C|3999, 8YOP|1|L5|G|4000, 8YOP|1|L5|C|4001, 8YOP|1|L5|G|4002, 8YOP|1|L5|A|4003, 8YOP|1|L5|G|4004, 8YOP|1|L5|G|4005, 8YOP|1|L5|G|4006, 8YOP|1|L5|G|4007, 8YOP|1|L5|C|4008, 8YOP|1|L5|C|4009, 8YOP|1|L5|C|4010, 8YOP|1|L5|G|4011, 8YOP|1|L5|G|4012, 8YOP|1|L5|G|4013, 8YOP|1|L5|G|4014, 8YOP|1|L5|C|4015, 8YOP|1|L5|G|4016, 8YOP|1|L5|G|4017, 8YOP|1|L5|G|4018, 8YOP|1|L5|G|4019, 8YOP|1|L5|U|4020, 8YOP|1|L5|C|4021, 8YOP|1|L5|C|4022, 8YOP|1|L5|G|4023, 8YOP|1|L5|C|4024, 8YOP|1|L5|C|4025, 8YOP|1|L5|G|4026, 8YOP|1|L5|G|4027, 8YOP|1|L5|C|4028, 8YOP|1|L5|C|4029, 8YOP|1|L5|C|4030, 8YOP|1|L5|U|4031, 8YOP|1|L5|G|4032, 8YOP|1|L5|C|4033, 8YOP|1|L5|G|4034, 8YOP|1|L5|G|4035, 8YOP|1|L5|C|4038, 8YOP|1|L5|G|4039, 8YOP|1|L5|U|4044, 8YOP|1|L5|G|4045, 8YOP|1|L5|A|4047, 8YOP|1|L5|C|4051, 8YOP|1|L5|C|4052, 8YOP|1|L5|A|4053, 8YOP|1|L5|C|4054
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YOP|1|L5|U|3950
8YOP|1|L5|G|3951
8YOP|1|L5|A|3952
8YOP|1|L5|G|3953
8YOP|1|L5|A|3954
8YOP|1|L5|G|3955
8YOP|1|L5|G|3956
8YOP|1|L5|U|3957
8YOP|1|L5|G|3958
8YOP|1|L5|U|3959
8YOP|1|L5|A|3960
8YOP|1|L5|G|3961
8YOP|1|L5|A|3962
8YOP|1|L5|A|3963
8YOP|1|L5|U|3964
8YOP|1|L5|A|3965
8YOP|1|L5|A|3966
8YOP|1|L5|G|3967
8YOP|1|L5|U|3968
8YOP|1|L5|G|3969
8YOP|1|L5|G|3970
8YOP|1|L5|G|3971
8YOP|1|L5|A|3972
8YOP|1|L5|G|3973
8YOP|1|L5|G|3974
8YOP|1|L5|C|3975
8YOP|1|L5|C|3976
8YOP|1|L5|C|3977
8YOP|1|L5|C|3978
8YOP|1|L5|C|3979
8YOP|1|L5|G|3980
8YOP|1|L5|G|3981
8YOP|1|L5|C|3982
8YOP|1|L5|G|3983
8YOP|1|L5|C|3984
8YOP|1|L5|C|3985
8YOP|1|L5|C|3986
8YOP|1|L5|C|3987
8YOP|1|L5|C|3988
8YOP|1|L5|C|3989
8YOP|1|L5|C|3990
8YOP|1|L5|G|3991
8YOP|1|L5|G|3992
8YOP|1|L5|U|3993
8YOP|1|L5|G|3994
8YOP|1|L5|U|3995
8YOP|1|L5|C|3996
8YOP|1|L5|C|3997
8YOP|1|L5|C|3998
8YOP|1|L5|C|3999
8YOP|1|L5|G|4000
8YOP|1|L5|C|4001
8YOP|1|L5|G|4002
8YOP|1|L5|A|4003
8YOP|1|L5|G|4004
8YOP|1|L5|G|4005
8YOP|1|L5|G|4006
8YOP|1|L5|G|4007
8YOP|1|L5|C|4008
8YOP|1|L5|C|4009
8YOP|1|L5|C|4010
8YOP|1|L5|G|4011
8YOP|1|L5|G|4012
8YOP|1|L5|G|4013
8YOP|1|L5|G|4014
8YOP|1|L5|C|4015
8YOP|1|L5|G|4016
8YOP|1|L5|G|4017
8YOP|1|L5|G|4018
8YOP|1|L5|G|4019
8YOP|1|L5|U|4020
8YOP|1|L5|C|4021
8YOP|1|L5|C|4022
8YOP|1|L5|G|4023
8YOP|1|L5|C|4024
8YOP|1|L5|C|4025
8YOP|1|L5|G|4026
8YOP|1|L5|G|4027
8YOP|1|L5|C|4028
8YOP|1|L5|C|4029
8YOP|1|L5|C|4030
8YOP|1|L5|U|4031
8YOP|1|L5|G|4032
8YOP|1|L5|C|4033
8YOP|1|L5|G|4034
8YOP|1|L5|G|4035
8YOP|1|L5|G|4036
8YOP|1|L5|C|4037
8YOP|1|L5|C|4038
8YOP|1|L5|G|4039
8YOP|1|L5|C|4040
8YOP|1|L5|C|4041
8YOP|1|L5|G|4042
8YOP|1|L5|G|4043
8YOP|1|L5|U|4044
8YOP|1|L5|G|4045
8YOP|1|L5|A|4046
8YOP|1|L5|A|4047
8YOP|1|L5|A|4048
8YOP|1|L5|U|4049
8YOP|1|L5|A|4050
8YOP|1|L5|C|4051
8YOP|1|L5|C|4052
8YOP|1|L5|A|4053
8YOP|1|L5|C|4054
8YOP|1|L5|U|4055
8YOP|1|L5|A|4056
8YOP|1|L5|C|4057
8YOP|1|L5|U|4058
8YOP|1|L5|C|4059
8YOP|1|L5|U|4060
8YOP|1|L5|G|4061
8YOP|1|L5|A|4062
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Li
- 60S ribosomal protein L36
- Chain Lz
- 60S ribosomal protein L10a
- Chain SB
- 40S ribosomal protein S3a
Coloring options: