HL_8YP6_003

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YP6_003 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.2305

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8YP6|1|a|G|155
8YP6|1|a|G|156
8YP6|1|a|A|157
8YP6|1|a|A|158
8YP6|1|a|A|159
8YP6|1|a|C|160

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20