HL_8YP6_027

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

8YP6|1|a|U|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YP6_027 not in the Motif Atlas

Homologous match to HL_6CZR_099

Geometric discrepancy: 0.3607

The information below is about HL_6CZR_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YP6|1|a|C|1246
8YP6|1|a|G|1247
8YP6|1|a|U|1248
8YP6|1|a|G|1249
8YP6|1|a|A|1250
8YP6|1|a|G|1251

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13

Chain s

Small ribosomal subunit protein uS19