HL_8YP6_029
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAUCAGCAACGC
- Length
- 12 nucleotides
- Bulged bases
- 8YP6|1|a|C|1344, 8YP6|1|a|A|1345, 8YP6|1|a|C|1347
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YP6_029 not in the Motif Atlas
- Homologous match to HL_6CZR_101
- Geometric discrepancy: 0.2672
- The information below is about HL_6CZR_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YP6|1|a|G|1338
8YP6|1|a|A|1339
8YP6|1|a|U|1340
8YP6|1|a|C|1341
8YP6|1|a|A|1342
8YP6|1|a|G|1343
8YP6|1|a|C|1344
8YP6|1|a|A|1345
8YP6|1|a|A|1346
8YP6|1|a|C|1347
8YP6|1|a|G|1348
8YP6|1|a|C|1349
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
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