HL_8YUO_011

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8YUO|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUO_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2384

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8YUO|1|A|G|462
8YUO|1|A|U|463
8YUO|1|A|U|464
8YUO|1|A|A|465
8YUO|1|A|A|466
8YUO|1|A|U|467
8YUO|1|A|A|468
8YUO|1|A|C|469
8YUO|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains