HL_8YUO_032

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

ACU(A1LZ3)AU(T6A)A(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A1LZ3, T6A, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUO_032 not in the Motif Atlas

Homologous match to HL_9DFC_104

Geometric discrepancy: 0.0965

The information below is about HL_9DFC_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8YUO|1|V|A|31
8YUO|1|V|C|32
8YUO|1|V|U|33
8YUO|1|V|A1LZ3|34
8YUO|1|V|A|35
8YUO|1|V|U|36
8YUO|1|V|T6A|37
8YUO|1|V|A|38
8YUO|1|V|PSU|39

Current chains

Chain V

A-site tRNAIle2

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain I

30S ribosomal protein S9

Chain W

mRNA