HL_8YUO_034

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CAG(H2U)(H2U)GG(H2U)(H2U)AG

Length

11 nucleotides

Bulged bases

8YUO|1|X|H2U|16, 8YUO|1|X|H2U|17, 8YUO|1|X|G|18, 8YUO|1|X|G|19, 8YUO|1|X|H2U|20, 8YUO|1|X|H2U|20|||A

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUO_034 not in the Motif Atlas

Homologous match to HL_7MRL_001

Geometric discrepancy: 0.1625

The information below is about HL_7MRL_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8YUO|1|X|C|13
8YUO|1|X|A|14
8YUO|1|X|G|15
8YUO|1|X|H2U|16
8YUO|1|X|H2U|17
8YUO|1|X|G|18
8YUO|1|X|G|19
8YUO|1|X|H2U|20
8YUO|1|X|H2U|20|||A
8YUO|1|X|A|21
8YUO|1|X|G|22

Current chains

Chain X

A-site tRNAIle2

Nearby chains

Chain V

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA