HL_8YUP_011

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8YUP|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUP_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3259

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8YUP|1|A|G|462
8YUP|1|A|U|463
8YUP|1|A|U|464
8YUP|1|A|A|465
8YUP|1|A|A|466
8YUP|1|A|U|467
8YUP|1|A|A|468
8YUP|1|A|C|469
8YUP|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains