HL_8YUP_045

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8YUP|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUP_045 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0945

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8YUP|1|a|C|305
8YUP|1|a|U|306
8YUP|1|a|G|307
8YUP|1|a|G|308
8YUP|1|a|A|309
8YUP|1|a|A|310
8YUP|1|a|A|311
8YUP|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L24