HL_8YUP_049
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GGACCAUC
- Length
- 8 nucleotides
- Bulged bases
- 8YUP|1|a|G|411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YUP_049 not in the Motif Atlas
- Homologous match to HL_5J7L_146
- Geometric discrepancy: 0.0724
- The information below is about HL_5J7L_146
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8YUP|1|a|G|410
8YUP|1|a|G|411
8YUP|1|a|A|412
8YUP|1|a|C|413
8YUP|1|a|C|414
8YUP|1|a|A|415
8YUP|1|a|U|416
8YUP|1|a|C|417
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain k
- 50S ribosomal protein L15
Coloring options: