HL_8YUP_060

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8YUP|1|a|U|827, 8YUP|1|a|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUP_060 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.067

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8YUP|1|a|U|826
8YUP|1|a|U|827
8YUP|1|a|U|828
8YUP|1|a|A|829
8YUP|1|a|G|830
8YUP|1|a|G|831

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15