HL_8YUQ_008

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8YUQ|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUQ_008 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1553

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8YUQ|1|A|C|342
8YUQ|1|A|U|343
8YUQ|1|A|A|344
8YUQ|1|A|C|345
8YUQ|1|A|G|346
8YUQ|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19