HL_8YUQ_011

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8YUQ|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUQ_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3098

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8YUQ|1|A|G|462
8YUQ|1|A|U|463
8YUQ|1|A|U|464
8YUQ|1|A|A|465
8YUQ|1|A|A|466
8YUQ|1|A|U|467
8YUQ|1|A|A|468
8YUQ|1|A|C|469
8YUQ|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains