3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CCU(U8U)UC(2MA)CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: U8U, 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YUQ_032 not in the Motif Atlas
Homologous match to HL_4TUE_034
Geometric discrepancy: 0.1129
The information below is about HL_4TUE_034
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.6
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

8YUQ|1|V|C|32
8YUQ|1|V|C|33
8YUQ|1|V|U|34
8YUQ|1|V|U8U|35
8YUQ|1|V|U|36
8YUQ|1|V|C|37
8YUQ|1|V|2MA|38
8YUQ|1|V|C|39
8YUQ|1|V|G|40

Current chains

Chain V
P-site tRNAGlu

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain I
30S ribosomal protein S9
Chain W
mRNA
Chain X
Transfer RNA; tRNA

Coloring options:


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