HL_8YUQ_032
3D structure
- PDB id
- 8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.41 Å
Loop
- Sequence
- CCU(U8U)UC(2MA)CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: U8U, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YUQ_032 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.1129
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8YUQ|1|V|C|32
8YUQ|1|V|C|33
8YUQ|1|V|U|34
8YUQ|1|V|U8U|35
8YUQ|1|V|U|36
8YUQ|1|V|C|37
8YUQ|1|V|2MA|38
8YUQ|1|V|C|39
8YUQ|1|V|G|40
Current chains
- Chain V
- P-site tRNAGlu
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S ribosomal protein S9
- Chain W
- mRNA
- Chain X
- Transfer RNA; tRNA
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