HL_8YUQ_045
3D structure
- PDB id
- 8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.41 Å
Loop
- Sequence
- CUGGAAAG
- Length
- 8 nucleotides
- Bulged bases
- 8YUQ|1|a|A|311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YUQ_045 not in the Motif Atlas
- Homologous match to HL_5J7L_142
- Geometric discrepancy: 0.0877
- The information below is about HL_5J7L_142
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
8YUQ|1|a|C|305
8YUQ|1|a|U|306
8YUQ|1|a|G|307
8YUQ|1|a|G|308
8YUQ|1|a|A|309
8YUQ|1|a|A|310
8YUQ|1|a|A|311
8YUQ|1|a|G|312
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain t
- 50S ribosomal protein L24
Coloring options: