3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CGAAUAG
Length
7 nucleotides
Bulged bases
8YUQ|1|a|U|615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YUQ_054 not in the Motif Atlas
Geometric match to HL_4V9F_036
Geometric discrepancy: 0.2319
The information below is about HL_4V9F_036
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8YUQ|1|a|C|611
8YUQ|1|a|G|612
8YUQ|1|a|A|613
8YUQ|1|a|A|614
8YUQ|1|a|U|615
8YUQ|1|a|A|616
8YUQ|1|a|G|617

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4

Coloring options:


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