3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
8YUQ|1|a|C|1870
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YUQ_080 not in the Motif Atlas
Homologous match to HL_7A0S_047
Geometric discrepancy: 0.4278
The information below is about HL_7A0S_047
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8YUQ|1|a|C|1868
8YUQ|1|a|G|1869
8YUQ|1|a|C|1870
8YUQ|1|a|A|1871
8YUQ|1|a|A|1872
8YUQ|1|a|G|1873

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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