HL_8YUQ_083

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

8YUQ|1|a|6MZ|2030, 8YUQ|1|a|A|2031, 8YUQ|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUQ_083 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0627

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

8YUQ|1|a|G|2027
8YUQ|1|a|U|2028
8YUQ|1|a|G|2029
8YUQ|1|a|6MZ|2030
8YUQ|1|a|A|2031
8YUQ|1|a|G|2032
8YUQ|1|a|A|2033
8YUQ|1|a|U|2034
8YUQ|1|a|G|2035
8YUQ|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain q

50S ribosomal protein L21

Chain z

50S ribosomal protein L32