HL_8YUS_073

3D structure

PDB id

8YUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

8YUS|1|a|A|1614, 8YUS|1|a|A|1616, 8YUS|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUS_073 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0551

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8YUS|1|a|C|1612
8YUS|1|a|G|1613
8YUS|1|a|A|1614
8YUS|1|a|C|1615
8YUS|1|a|A|1616
8YUS|1|a|C|1617
8YUS|1|a|6MZ|1618
8YUS|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain r

50S ribosomal protein L22