HL_8Z70_005

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8Z70|1|2|U|232, 8Z70|1|2|C|233, 8Z70|1|2|G|234

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_005 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2127

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8Z70|1|2|C|230
8Z70|1|2|U|231
8Z70|1|2|U|232
8Z70|1|2|C|233
8Z70|1|2|G|234
8Z70|1|2|G|235

Current chains

Chain 2

18S rRNA

Nearby chains