HL_8Z70_011

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8Z70|1|2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_011 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.2427

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8Z70|1|2|C|414
8Z70|1|2|C|415
8Z70|1|2|A|416
8Z70|1|2|A|417
8Z70|1|2|G|418
8Z70|1|2|G|419

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain X

Large ribosomal subunit protein uL14A

Chain s

Transfer RNA; tRNA

Chain x

Elongation factor 1-alpha 1