HL_8Z70_030

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_030 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.426

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8Z70|1|2|U|1396
8Z70|1|2|U|1397
8Z70|1|2|U|1398
8Z70|1|2|C|1399
8Z70|1|2|A|1400
8Z70|1|2|A|1401
8Z70|1|2|G|1402

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A

Chain SL

Small ribosomal subunit protein eS28A