HL_8Z70_045

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

8Z70|1|A|A|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_045 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1861

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Z70|1|A|A|357
8Z70|1|A|G|358
8Z70|1|A|U|359
8Z70|1|A|G|360
8Z70|1|A|A|361
8Z70|1|A|U|362

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain l

Large ribosomal subunit protein eL37A

Chain n

Large ribosomal subunit protein eL39