HL_8Z70_058

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8Z70|1|A|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_058 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.1776

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8Z70|1|A|C|1076
8Z70|1|A|U|1077
8Z70|1|A|U|1078
8Z70|1|A|A|1079
8Z70|1|A|A|1080
8Z70|1|A|U|1081
8Z70|1|A|U|1082
8Z70|1|A|G|1083

Current chains

Chain A

25S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL18

Chain V

Large ribosomal subunit protein eL21A

Chain d

Large ribosomal subunit protein eL29