HL_8Z70_063

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

8Z70|1|A|A|1407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_063 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1687

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Z70|1|A|C|1403
8Z70|1|A|G|1404
8Z70|1|A|U|1405
8Z70|1|A|A|1406
8Z70|1|A|A|1407
8Z70|1|A|G|1408

Current chains

Chain A

25S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein eL32