HL_8Z70_069

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_069 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.148

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Z70|1|A|G|1634
8Z70|1|A|G|1635
8Z70|1|A|U|1636
8Z70|1|A|A|1637
8Z70|1|A|A|1638
8Z70|1|A|C|1639

Current chains

Chain A

25S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein eL27A

Chain i

Large ribosomal subunit protein eL34A