HL_8Z70_098
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z70_098 not in the Motif Atlas
- Homologous match to HL_8C3A_066
- Geometric discrepancy: 0.1359
- The information below is about HL_8C3A_066
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8Z70|1|A|C|3025
8Z70|1|A|G|3026
8Z70|1|A|A|3027
8Z70|1|A|G|3028
8Z70|1|A|A|3029
8Z70|1|A|G|3030
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL6A
- Chain o
- Large ribosomal subunit protein eL40A
- Chain s
- Transfer RNA; tRNA
- Chain x
- Elongation factor 1-alpha 1
Coloring options: