HL_8Z70_116
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z70_116 not in the Motif Atlas
- Homologous match to HL_5HR6_003
- Geometric discrepancy: 0.1786
- The information below is about HL_5HR6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8Z70|1|t|G|53
8Z70|1|t|A|54
8Z70|1|t|U|55
8Z70|1|t|C|56
8Z70|1|t|G|57
8Z70|1|t|A|58
8Z70|1|t|A|59
8Z70|1|t|A|60
8Z70|1|t|C|61
Current chains
- Chain t
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- Large ribosomal subunit protein uL5B
- Chain q
- Large ribosomal subunit protein eL42A
Coloring options: