HL_8Z71_017

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8Z71|1|2|U|779, 8Z71|1|2|U|781, 8Z71|1|2|U|782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_017 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.4583

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8Z71|1|2|C|777
8Z71|1|2|G|778
8Z71|1|2|U|779
8Z71|1|2|A|780
8Z71|1|2|U|781
8Z71|1|2|U|782
8Z71|1|2|G|783

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sd

Small ribosomal subunit protein eS24A