HL_8Z71_022

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_022 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.3048

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8Z71|1|2|U|1055
8Z71|1|2|U|1056
8Z71|1|2|U|1057
8Z71|1|2|U|1058
8Z71|1|2|U|1059
8Z71|1|2|U|1060
8Z71|1|2|A|1061
8Z71|1|2|A|1062
8Z71|1|2|U|1063
8Z71|1|2|G|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain Sf

Small ribosomal subunit protein eS27A