HL_8Z71_044
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 8Z71|1|A|G|304, 8Z71|1|A|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z71_044 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1269
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8Z71|1|A|G|303
8Z71|1|A|G|304
8Z71|1|A|U|305
8Z71|1|A|A|306
8Z71|1|A|A|307
8Z71|1|A|A|308
8Z71|1|A|U|309
8Z71|1|A|U|310
8Z71|1|A|C|311
8Z71|1|A|C|312
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein eL15A
- Chain c
- Large ribosomal subunit protein uL15
- Chain k
- Large ribosomal subunit protein eL36A
- Chain q
- Large ribosomal subunit protein eL42A
Coloring options: