HL_8Z71_052

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_052 not in the Motif Atlas

Homologous match to HL_8P9A_129

Geometric discrepancy: 0.2839

The information below is about HL_8P9A_129

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8Z71|1|A|C|732
8Z71|1|A|G|733
8Z71|1|A|C|734
8Z71|1|A|A|735
8Z71|1|A|A|736
8Z71|1|A|G|737

Current chains

Chain A

25S rRNA

Nearby chains