HL_8Z71_088

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAACGAUAACGC

Length

15 nucleotides

Bulged bases

8Z71|1|A|A|2637, 8Z71|1|A|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z71|1|A|G|2632
8Z71|1|A|U|2633
8Z71|1|A|U|2634
8Z71|1|A|A|2635
8Z71|1|A|A|2636
8Z71|1|A|A|2637
8Z71|1|A|C|2638
8Z71|1|A|G|2639
8Z71|1|A|A|2640
8Z71|1|A|U|2641
8Z71|1|A|A|2642
8Z71|1|A|A|2643
8Z71|1|A|C|2644
8Z71|1|A|G|2645
8Z71|1|A|C|2646

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL16

Chain V

Large ribosomal subunit protein eL21A

Chain d

Large ribosomal subunit protein eL29