HL_8Z71_119

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8Z71|1|A|G|3116, 8Z71|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_119 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.156

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8Z71|1|A|C|3110
8Z71|1|A|U|3111
8Z71|1|A|G|3112
8Z71|1|A|A|3113
8Z71|1|A|A|3114
8Z71|1|A|C|3115
8Z71|1|A|G|3116
8Z71|1|A|C|3117
8Z71|1|A|C|3118
8Z71|1|A|U|3119
8Z71|1|A|C|3120
8Z71|1|A|U|3121
8Z71|1|A|A|3122
8Z71|1|A|A|3123
8Z71|1|A|G|3124

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain Q

Large ribosomal subunit protein uL13A

Chain o

Large ribosomal subunit protein eL40A