HL_8ZDB_010

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8ZDB|1|2|A|500, 8ZDB|1|2|C|502, 8ZDB|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_010 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.1615

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8ZDB|1|2|C|498
8ZDB|1|2|G|499
8ZDB|1|2|A|500
8ZDB|1|2|C|501
8ZDB|1|2|C|502
8ZDB|1|2|C|503
8ZDB|1|2|G|504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain Y

Small ribosomal subunit protein eS24